总览 · ← 返回运行 aborted-20261001-203708-search-t1-g21q-A
节点 n5
| 运行?一次完整的自动搜索或 Agent 会话，有自己的锁定配置和证据包。 | aborted-20261001-203708-search-t1-g21q-A |
|---|---|
| 父节点 | n1 |
| 子节点 | — |
| 操作?种子：人写的起点；改进：在父节点上改；草稿：从头写；修复：修父节点的报错。 | 改进 |
| 状态 | 调研中 |
| 分数 | 没有分数 |
| 审查 | 未审查 |
| 用时?从运行开始到结束（或到现在）的挂钟时间。 | — |
| 程序版本 | — （programs.git） |
方法说明?节点程序自带的 METHOD.md：这个程序做了什么、为什么。
没有 METHOD.md。
调研员的计划
没有计划（PLAN.json）。
代码改动?这个节点的程序和父节点程序的逐行差别：绿色是新增，红色是删除。
这个节点没有程序版本（没有生成代码）
调研来源?调研员查到并用到的知识条目和文献检索结果（只列标题和编号）。
用到的知识库条目
| 编号 | 标题 | 出处 |
|---|---|---|
| k018 | Damped per-type shift: shrinkage alpha on the observed delta | notes/plan/cards/T1.md |
| k012 | Official T1 scoring, output contract and adversarial controls | notes/official/来件/virtualembryo.ai/task1-temporal.md; notes/official/来件/virtualembryo.ai/baselines.md |
| k016 | Degenerate-solution checks for population predictions | notes/handover/02_知识学习路线.md |
文献检索
| 检索词 | 来源库 | 返回（标题 / 编号） |
|---|---|---|
| limma empirical Bayes moderated fold change shrinkage gene-wise variance | pubmed | 没有结果 |
| unbalanced optimal transport cell proliferation growth single-cell time course | arxiv | CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics data https://arxiv.org/abs/2311.04567v2 The effects of stochasticity at the single-cell level and cell size control on the population growth https://arxiv.org/abs/1611.07989v2 Integrating Optimal Transport and Structural Inference Models for GRN Inference from Single-cell Data https://arxiv.org/abs/2409.15080v1 Minimal cellular automaton model with heterogeneous cell sizes predicts epithelial colony growth 10.1016/j.jtbi.2024.111882 |
| cell cycle proliferation score predicts clonal expansion developmental stage composition single cell | pubmed | 没有结果 |
| growth balanced optimal transport cell population clonal expansion unbalanced | pubmed | 没有结果 |
| non-equilibrium optimal transport predicting cell distribution across consecutive time points Waddington | openalex | Temporal modelling using single-cell transcriptomics 10.1038/s41576-021-00444-7 Invited review: Body condition score and its association with dairy cow productivity, health, and welfare 10.3168/jds.2009-2431 ASNC/AHA/ASE/EANM/HFSA/ISA/SCMR/SNMMI expert consensus recommendations for multimodality imaging in cardiac amyloidosis: Part 1 of 2—evidence base and standardized methods of imaging 10.1007/s12350-019-01760-6 A physics-informed neural SDE network for learning cellular dynamics from time-series scRNA-seq data 10.1093/bioinformatics/btae400 |
| predict future cell type proportions from single time point using cell cycle proliferation scores single-cell RNA-seq | exa | Cell-Cycle Scoring and Regression • Seurat - Satija Lab https://satijalab.org/seurat/articles/cell_cycle_vignette Statistical test to compare cell type proportions in scrnaseq data https://www.biostars.org/p/9597303/ |
| unbalanced optimal transport cell growth death population dynamics single cell | openalex | The mitochondrial permeability transition pore and its involvement in cell death and in disease pathogenesis 10.1007/s10495-007-0723-y Oral squamous cell carcinomas: state of the field and emerging directions 10.1038/s41368-023-00249-w Reconstructing growth and dynamic trajectories from single-cell transcriptomics data 10.1038/s42256-023-00763-w |
分析结果?分析员写的 ANALYSIS.json：改了什么、各组分数怎么变、假设是否成立、经验和下一步建议。
没有分析结果（ANALYSIS.json）。
对话摘要?每个角色和大模型对话的统计：轮数、工具调用、用时、token 数和最后的回答摘录；原始记录只给路径。
只给统计和最后回答的摘录；完整对话请到原始记录位置?完整对话记录在 Spark 上的文件路径；看板不复制原始内容。里列出的文件看。
这个节点没有大模型对话记录。